X-Git-Url: http://git.nguyen.vg/gitweb/?a=blobdiff_plain;f=dependencies.mk;h=494b444dde7ef1624baa83541a1532e7f95df106;hb=338b9d601d0bae8ee76813852ea146ef7ba901d8;hp=29c07af49661e98fe64666d3a97a0cbb4cb42b5c;hpb=eb04a05de55af8957aea1353d21b5e5b98bd1006;p=SXSI%2FTextCollection.git

diff --git a/dependencies.mk b/dependencies.mk
index 29c07af..494b444 100644
--- a/dependencies.mk
+++ b/dependencies.mk
@@ -1,13 +1,66 @@
-BitRank.o: BitRank.cpp BitRank.h Tools.h
-CSA.o: CSA.cpp CSA.h BitRank.h Tools.h dynFMI.h bittree.h rbtree.h \
-  handle.h pos.h
-TextCollection.o: TextCollection.cpp TextCollection.h Tools.h
+BitRank.o: BitRank.cpp BitRank.h BlockArray.h Tools.h
+EditDistance.o: EditDistance.cpp EditDistance.h Tools.h
+FMIndex.o: FMIndex.cpp FMIndex.h incbwt/bits/deltavector.h \
+ incbwt/bits/bitvector.h incbwt/bits/../misc/definitions.h \
+ incbwt/bits/bitbuffer.h BitRank.h BlockArray.h Tools.h TextCollection.h \
+ TextStorage.h ArrayDoc.h
+FMIndexBuilder.o: FMIndexBuilder.cpp incbwt/rlcsa_builder.h \
+ incbwt/rlcsa.h incbwt/bits/deltavector.h incbwt/bits/bitvector.h \
+ incbwt/bits/../misc/definitions.h incbwt/bits/bitbuffer.h \
+ incbwt/bits/rlevector.h incbwt/bits/nibblevector.h incbwt/sasamples.h \
+ incbwt/misc/definitions.h incbwt/bits/bitbuffer.h incbwt/lcpsamples.h \
+ incbwt/bits/array.h incbwt/misc/utils.h incbwt/misc/definitions.h \
+ incbwt/misc/parameters.h incbwt/bits/deltavector.h FMIndexBuilder.h \
+ TextCollectionBuilder.h TextCollection.h Tools.h TextStorage.h FMIndex.h \
+ BitRank.h BlockArray.h ArrayDoc.h
+HeapProfiler.o: HeapProfiler.cpp HeapProfiler.h
+Query.o: Query.cpp Query.h TextCollection.h Tools.h
+RLCSABuilder.o: RLCSABuilder.cpp incbwt/rlcsa_builder.h incbwt/rlcsa.h \
+ incbwt/bits/deltavector.h incbwt/bits/bitvector.h \
+ incbwt/bits/../misc/definitions.h incbwt/bits/bitbuffer.h \
+ incbwt/bits/rlevector.h incbwt/bits/nibblevector.h incbwt/sasamples.h \
+ incbwt/misc/definitions.h incbwt/bits/bitbuffer.h incbwt/lcpsamples.h \
+ incbwt/bits/array.h incbwt/misc/utils.h incbwt/misc/definitions.h \
+ incbwt/misc/parameters.h RLCSABuilder.h TextCollectionBuilder.h \
+ TextCollection.h Tools.h TextStorage.h incbwt/bits/deltavector.h \
+ RLCSAWrapper.h IndelQuery.h ResultSet.h EditDistance.h Query.h \
+ incbwt/rlcsa.h
+ResultSet.o: ResultSet.cpp ResultSet.h
+TextCollection.o: TextCollection.cpp TextCollection.h Tools.h FMIndex.h \
+ incbwt/bits/deltavector.h incbwt/bits/bitvector.h \
+ incbwt/bits/../misc/definitions.h incbwt/bits/bitbuffer.h BitRank.h \
+ BlockArray.h TextStorage.h ArrayDoc.h SWCSAWrapper.h \
+ swcsa/utils/defValues.h swcsa/utils/valstring.h swcsa/interface.h \
+ RLCSAWrapper.h IndelQuery.h ResultSet.h EditDistance.h Query.h \
+ incbwt/rlcsa.h incbwt/bits/deltavector.h incbwt/bits/rlevector.h \
+ incbwt/bits/nibblevector.h incbwt/sasamples.h incbwt/misc/definitions.h \
+ incbwt/bits/bitbuffer.h incbwt/lcpsamples.h incbwt/bits/array.h \
+ incbwt/misc/utils.h incbwt/misc/definitions.h incbwt/misc/parameters.h
+TextCollectionBuilder.o: TextCollectionBuilder.cpp \
+ TextCollectionBuilder.h TextCollection.h Tools.h TextStorage.h \
+ incbwt/bits/deltavector.h incbwt/bits/bitvector.h \
+ incbwt/bits/../misc/definitions.h incbwt/bits/bitbuffer.h \
+ FMIndexBuilder.h SWCSABuilder.h SWCSAWrapper.h swcsa/utils/defValues.h \
+ swcsa/utils/valstring.h swcsa/interface.h RLCSABuilder.h
+TextStorage.o: TextStorage.cpp TextStorage.h TextCollection.h Tools.h \
+ incbwt/bits/deltavector.h incbwt/bits/bitvector.h \
+ incbwt/bits/../misc/definitions.h incbwt/bits/bitbuffer.h \
+ lzindex/lztrie.h lzindex/basics.h lzindex/trie.h lzindex/heap.h \
+ lzindex/parentheses.h lzindex/bitmap.h lzindex/hash.h lzindex/nodemap.h \
+ lzindex/position.h
 Tools.o: Tools.cpp Tools.h
-bittree.o: bittree.cpp bittree.h rbtree.h
-dynFMI.o: dynFMI.cpp dynFMI.h bittree.h rbtree.h handle.h pos.h
-handle.o: handle.cpp handle.h rbtree.h pos.h
-pos.o: pos.cpp pos.h rbtree.h handle.h
+bittree.o: bittree.cpp bittree.h rbtree.h Tools.h
+dynFMI.o: dynFMI.cpp dynFMI.h bittree.h rbtree.h Tools.h
 rbtree.o: rbtree.cpp rbtree.h
-testTextCollection.o: testTextCollection.cpp CSA.h BitRank.h Tools.h \
-  dynFMI.h bittree.h rbtree.h handle.h pos.h TextCollection.h
-HeapProfiler.o: HeapProfiler.h HeapProfiler.cpp 
\ No newline at end of file
+testTextCollection.o: testTextCollection.cpp TextCollectionBuilder.h \
+ TextCollection.h Tools.h TextStorage.h incbwt/bits/deltavector.h \
+ incbwt/bits/bitvector.h incbwt/bits/../misc/definitions.h \
+ incbwt/bits/bitbuffer.h HeapProfiler.h
+testTextCollection5.o: testTextCollection5.cpp HeapProfiler.h \
+ TextCollectionBuilder.h TextCollection.h Tools.h TextStorage.h \
+ incbwt/bits/deltavector.h incbwt/bits/bitvector.h \
+ incbwt/bits/../misc/definitions.h incbwt/bits/bitbuffer.h
+timeTextCollection.o: timeTextCollection.cpp TextCollectionBuilder.h \
+ TextCollection.h Tools.h TextStorage.h incbwt/bits/deltavector.h \
+ incbwt/bits/bitvector.h incbwt/bits/../misc/definitions.h \
+ incbwt/bits/bitbuffer.h