X-Git-Url: http://git.nguyen.vg/gitweb/?a=blobdiff_plain;f=dependencies.mk;h=494b444dde7ef1624baa83541a1532e7f95df106;hb=9abbea1aba3d81f1eccd84a92d1857e46a1b3ba2;hp=f7747de7878e52a21decf2e82b75bcdd5680dd81;hpb=40ddf9aca842bdc081b6350a4ebfe36b066c94c9;p=SXSI%2FTextCollection.git

diff --git a/dependencies.mk b/dependencies.mk
index f7747de..494b444 100644
--- a/dependencies.mk
+++ b/dependencies.mk
@@ -1,33 +1,66 @@
-BSGAP.o: BSGAP.cpp BSGAP.h Tools.h BlockArray.h
 BitRank.o: BitRank.cpp BitRank.h BlockArray.h Tools.h
-GapEncode.o: GapEncode.cpp GapEncode.h Tools.h BlockArray.h BSGAP.h
+EditDistance.o: EditDistance.cpp EditDistance.h Tools.h
+FMIndex.o: FMIndex.cpp FMIndex.h incbwt/bits/deltavector.h \
+ incbwt/bits/bitvector.h incbwt/bits/../misc/definitions.h \
+ incbwt/bits/bitbuffer.h BitRank.h BlockArray.h Tools.h TextCollection.h \
+ TextStorage.h ArrayDoc.h
+FMIndexBuilder.o: FMIndexBuilder.cpp incbwt/rlcsa_builder.h \
+ incbwt/rlcsa.h incbwt/bits/deltavector.h incbwt/bits/bitvector.h \
+ incbwt/bits/../misc/definitions.h incbwt/bits/bitbuffer.h \
+ incbwt/bits/rlevector.h incbwt/bits/nibblevector.h incbwt/sasamples.h \
+ incbwt/misc/definitions.h incbwt/bits/bitbuffer.h incbwt/lcpsamples.h \
+ incbwt/bits/array.h incbwt/misc/utils.h incbwt/misc/definitions.h \
+ incbwt/misc/parameters.h incbwt/bits/deltavector.h FMIndexBuilder.h \
+ TextCollectionBuilder.h TextCollection.h Tools.h TextStorage.h FMIndex.h \
+ BitRank.h BlockArray.h ArrayDoc.h
 HeapProfiler.o: HeapProfiler.cpp HeapProfiler.h
-RLWaveletTree.o: RLWaveletTree.cpp RLWaveletTree.h GapEncode.h Tools.h \
-  BlockArray.h BSGAP.h BitRank.h
-TCImplementation.o: TCImplementation.cpp TCImplementation.h BitRank.h \
-  BlockArray.h Tools.h TextCollection.h BSGAP.h
-TextCollection.o: TextCollection.cpp TextCollection.h Tools.h \
-  TCImplementation.h BitRank.h BlockArray.h BSGAP.h
+Query.o: Query.cpp Query.h TextCollection.h Tools.h
+RLCSABuilder.o: RLCSABuilder.cpp incbwt/rlcsa_builder.h incbwt/rlcsa.h \
+ incbwt/bits/deltavector.h incbwt/bits/bitvector.h \
+ incbwt/bits/../misc/definitions.h incbwt/bits/bitbuffer.h \
+ incbwt/bits/rlevector.h incbwt/bits/nibblevector.h incbwt/sasamples.h \
+ incbwt/misc/definitions.h incbwt/bits/bitbuffer.h incbwt/lcpsamples.h \
+ incbwt/bits/array.h incbwt/misc/utils.h incbwt/misc/definitions.h \
+ incbwt/misc/parameters.h RLCSABuilder.h TextCollectionBuilder.h \
+ TextCollection.h Tools.h TextStorage.h incbwt/bits/deltavector.h \
+ RLCSAWrapper.h IndelQuery.h ResultSet.h EditDistance.h Query.h \
+ incbwt/rlcsa.h
+ResultSet.o: ResultSet.cpp ResultSet.h
+TextCollection.o: TextCollection.cpp TextCollection.h Tools.h FMIndex.h \
+ incbwt/bits/deltavector.h incbwt/bits/bitvector.h \
+ incbwt/bits/../misc/definitions.h incbwt/bits/bitbuffer.h BitRank.h \
+ BlockArray.h TextStorage.h ArrayDoc.h SWCSAWrapper.h \
+ swcsa/utils/defValues.h swcsa/utils/valstring.h swcsa/interface.h \
+ RLCSAWrapper.h IndelQuery.h ResultSet.h EditDistance.h Query.h \
+ incbwt/rlcsa.h incbwt/bits/deltavector.h incbwt/bits/rlevector.h \
+ incbwt/bits/nibblevector.h incbwt/sasamples.h incbwt/misc/definitions.h \
+ incbwt/bits/bitbuffer.h incbwt/lcpsamples.h incbwt/bits/array.h \
+ incbwt/misc/utils.h incbwt/misc/definitions.h incbwt/misc/parameters.h
 TextCollectionBuilder.o: TextCollectionBuilder.cpp \
-  TextCollectionBuilder.h TextCollection.h Tools.h incbwt/rlcsa_builder.h \
-  incbwt/rlcsa.h incbwt/bits/vectors.h incbwt/bits/deltavector.h \
-  incbwt/bits/bitvector.h incbwt/bits/../misc/definitions.h \
-  incbwt/bits/bitbuffer.h incbwt/bits/rlevector.h incbwt/sasamples.h \
-  incbwt/misc/definitions.h incbwt/bits/bitbuffer.h \
-  incbwt/bits/deltavector.h incbwt/misc/parameters.h \
-  incbwt/misc/definitions.h TCImplementation.h BitRank.h BlockArray.h \
-  BSGAP.h dynFMI.h bittree.h rbtree.h
+ TextCollectionBuilder.h TextCollection.h Tools.h TextStorage.h \
+ incbwt/bits/deltavector.h incbwt/bits/bitvector.h \
+ incbwt/bits/../misc/definitions.h incbwt/bits/bitbuffer.h \
+ FMIndexBuilder.h SWCSABuilder.h SWCSAWrapper.h swcsa/utils/defValues.h \
+ swcsa/utils/valstring.h swcsa/interface.h RLCSABuilder.h
+TextStorage.o: TextStorage.cpp TextStorage.h TextCollection.h Tools.h \
+ incbwt/bits/deltavector.h incbwt/bits/bitvector.h \
+ incbwt/bits/../misc/definitions.h incbwt/bits/bitbuffer.h \
+ lzindex/lztrie.h lzindex/basics.h lzindex/trie.h lzindex/heap.h \
+ lzindex/parentheses.h lzindex/bitmap.h lzindex/hash.h lzindex/nodemap.h \
+ lzindex/position.h
 Tools.o: Tools.cpp Tools.h
 bittree.o: bittree.cpp bittree.h rbtree.h Tools.h
 dynFMI.o: dynFMI.cpp dynFMI.h bittree.h rbtree.h Tools.h
 rbtree.o: rbtree.cpp rbtree.h
 testTextCollection.o: testTextCollection.cpp TextCollectionBuilder.h \
-  TextCollection.h Tools.h HeapProfiler.h
-testTextCollection2.o: testTextCollection2.cpp TextCollection.h Tools.h \
-  HeapProfiler.h
-testTextCollection3.o: testTextCollection3.cpp TextCollection.h Tools.h
-testTextCollection4.o: testTextCollection4.cpp TCImplementation.h \
-  BitRank.h BlockArray.h Tools.h TextCollection.h BSGAP.h HeapProfiler.h
+ TextCollection.h Tools.h TextStorage.h incbwt/bits/deltavector.h \
+ incbwt/bits/bitvector.h incbwt/bits/../misc/definitions.h \
+ incbwt/bits/bitbuffer.h HeapProfiler.h
 testTextCollection5.o: testTextCollection5.cpp HeapProfiler.h \
-  TextCollection.h Tools.h
-timeTextCollection.o: timeTextCollection.cpp TextCollection.h Tools.h
+ TextCollectionBuilder.h TextCollection.h Tools.h TextStorage.h \
+ incbwt/bits/deltavector.h incbwt/bits/bitvector.h \
+ incbwt/bits/../misc/definitions.h incbwt/bits/bitbuffer.h
+timeTextCollection.o: timeTextCollection.cpp TextCollectionBuilder.h \
+ TextCollection.h Tools.h TextStorage.h incbwt/bits/deltavector.h \
+ incbwt/bits/bitvector.h incbwt/bits/../misc/definitions.h \
+ incbwt/bits/bitbuffer.h