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diff --git a/incbwt/dependencies.mk b/incbwt/dependencies.mk
index 415788b..1c203df 100644
--- a/incbwt/dependencies.mk
+++ b/incbwt/dependencies.mk
@@ -1,26 +1,95 @@
-rlcsa.o: rlcsa.cpp rlcsa.h bits/vectors.h bits/deltavector.h \
+build_plcp.o: build_plcp.cpp rlcsa.h bits/deltavector.h bits/bitvector.h \
+ bits/../misc/definitions.h bits/bitbuffer.h bits/rlevector.h \
+ bits/nibblevector.h sasamples.h misc/definitions.h bits/bitbuffer.h \
+ lcpsamples.h bits/array.h bits/vectors.h misc/utils.h misc/definitions.h \
+ misc/parameters.h
+build_rlcsa.o: build_rlcsa.cpp rlcsa_builder.h rlcsa.h bits/deltavector.h \
  bits/bitvector.h bits/../misc/definitions.h bits/bitbuffer.h \
- bits/rlevector.h sasamples.h misc/definitions.h bits/bitbuffer.h \
- bits/deltavector.h misc/parameters.h misc/definitions.h misc/utils.h \
- qsufsort/qsufsort.h qsufsort/../misc/definitions.h
-rlcsa_builder.o: rlcsa_builder.cpp rlcsa_builder.h rlcsa.h bits/vectors.h \
+ bits/rlevector.h bits/nibblevector.h sasamples.h misc/definitions.h \
+ bits/bitbuffer.h lcpsamples.h bits/array.h bits/vectors.h misc/utils.h \
+ misc/definitions.h misc/parameters.h
+display_test.o: display_test.cpp rlcsa.h bits/deltavector.h \
+ bits/bitvector.h bits/../misc/definitions.h bits/bitbuffer.h \
+ bits/rlevector.h bits/nibblevector.h sasamples.h misc/definitions.h \
+ bits/bitbuffer.h lcpsamples.h bits/array.h bits/vectors.h misc/utils.h \
+ misc/definitions.h misc/parameters.h
+extract_sequence.o: extract_sequence.cpp rlcsa.h bits/deltavector.h \
+ bits/bitvector.h bits/../misc/definitions.h bits/bitbuffer.h \
+ bits/rlevector.h bits/nibblevector.h sasamples.h misc/definitions.h \
+ bits/bitbuffer.h lcpsamples.h bits/array.h bits/vectors.h misc/utils.h \
+ misc/definitions.h misc/parameters.h
+lcp_test.o: lcp_test.cpp rlcsa.h bits/deltavector.h bits/bitvector.h \
+ bits/../misc/definitions.h bits/bitbuffer.h bits/rlevector.h \
+ bits/nibblevector.h sasamples.h misc/definitions.h bits/bitbuffer.h \
+ lcpsamples.h bits/array.h bits/vectors.h misc/utils.h misc/definitions.h \
+ misc/parameters.h
+lcpsamples.o: lcpsamples.cpp lcpsamples.h bits/array.h \
+ bits/../misc/definitions.h bits/bitbuffer.h bits/vectors.h misc/utils.h \
+ misc/definitions.h
+locate_test.o: locate_test.cpp rlcsa.h bits/deltavector.h \
+ bits/bitvector.h bits/../misc/definitions.h bits/bitbuffer.h \
+ bits/rlevector.h bits/nibblevector.h sasamples.h misc/definitions.h \
+ bits/bitbuffer.h lcpsamples.h bits/array.h bits/vectors.h misc/utils.h \
+ misc/definitions.h misc/parameters.h
+parallel_build.o: parallel_build.cpp rlcsa_builder.h rlcsa.h \
+ bits/deltavector.h bits/bitvector.h bits/../misc/definitions.h \
+ bits/bitbuffer.h bits/rlevector.h bits/nibblevector.h sasamples.h \
+ misc/definitions.h bits/bitbuffer.h lcpsamples.h bits/array.h \
+ bits/vectors.h misc/utils.h misc/definitions.h misc/parameters.h
+read_bwt.o: read_bwt.cpp rlcsa.h bits/deltavector.h bits/bitvector.h \
+ bits/../misc/definitions.h bits/bitbuffer.h bits/rlevector.h \
+ bits/nibblevector.h sasamples.h misc/definitions.h bits/bitbuffer.h \
+ lcpsamples.h bits/array.h bits/vectors.h misc/utils.h misc/definitions.h \
+ misc/parameters.h
+rlcsa.o: rlcsa.cpp rlcsa.h bits/deltavector.h bits/bitvector.h \
+ bits/../misc/definitions.h bits/bitbuffer.h bits/rlevector.h \
+ bits/nibblevector.h sasamples.h misc/definitions.h bits/bitbuffer.h \
+ lcpsamples.h bits/array.h bits/vectors.h misc/utils.h misc/definitions.h \
+ misc/parameters.h qsufsort/qsufsort.h qsufsort/../misc/definitions.h
+rlcsa_builder.o: rlcsa_builder.cpp rlcsa_builder.h rlcsa.h \
  bits/deltavector.h bits/bitvector.h bits/../misc/definitions.h \
- bits/bitbuffer.h bits/rlevector.h sasamples.h misc/definitions.h \
- bits/bitbuffer.h bits/deltavector.h misc/parameters.h misc/definitions.h
+ bits/bitbuffer.h bits/rlevector.h bits/nibblevector.h sasamples.h \
+ misc/definitions.h bits/bitbuffer.h lcpsamples.h bits/array.h \
+ bits/vectors.h misc/utils.h misc/definitions.h misc/parameters.h
+rlcsa_grep.o: rlcsa_grep.cpp rlcsa.h bits/deltavector.h bits/bitvector.h \
+ bits/../misc/definitions.h bits/bitbuffer.h bits/rlevector.h \
+ bits/nibblevector.h sasamples.h misc/definitions.h bits/bitbuffer.h \
+ lcpsamples.h bits/array.h bits/vectors.h misc/utils.h misc/definitions.h \
+ misc/parameters.h
+rlcsa_test.o: rlcsa_test.cpp rlcsa.h bits/deltavector.h bits/bitvector.h \
+ bits/../misc/definitions.h bits/bitbuffer.h bits/rlevector.h \
+ bits/nibblevector.h sasamples.h misc/definitions.h bits/bitbuffer.h \
+ lcpsamples.h bits/array.h bits/vectors.h misc/utils.h misc/definitions.h \
+ misc/parameters.h
+sample_lcp.o: sample_lcp.cpp rlcsa.h bits/deltavector.h bits/bitvector.h \
+ bits/../misc/definitions.h bits/bitbuffer.h bits/rlevector.h \
+ bits/nibblevector.h sasamples.h misc/definitions.h bits/bitbuffer.h \
+ lcpsamples.h bits/array.h bits/vectors.h misc/utils.h misc/definitions.h \
+ misc/parameters.h
 sasamples.o: sasamples.cpp sasamples.h misc/definitions.h \
  bits/bitbuffer.h bits/../misc/definitions.h bits/deltavector.h \
  bits/bitvector.h bits/bitbuffer.h misc/utils.h misc/definitions.h
+array.o: bits/array.cpp bits/array.h bits/../misc/definitions.h \
+ bits/bitbuffer.h
 bitvector.o: bits/bitvector.cpp bits/bitvector.h \
  bits/../misc/definitions.h bits/bitbuffer.h
 deltavector.o: bits/deltavector.cpp bits/deltavector.h bits/bitvector.h \
  bits/../misc/definitions.h bits/bitbuffer.h
+nibblevector.o: bits/nibblevector.cpp bits/nibblevector.h \
+ bits/bitvector.h bits/../misc/definitions.h bits/bitbuffer.h \
+ bits/../misc/utils.h bits/../misc/definitions.h
 rlevector.o: bits/rlevector.cpp bits/rlevector.h bits/bitvector.h \
  bits/../misc/definitions.h bits/bitbuffer.h bits/../misc/utils.h \
  bits/../misc/definitions.h
-vectors.o: bits/vectors.cpp bits/vectors.h bits/deltavector.h \
- bits/bitvector.h bits/../misc/definitions.h bits/bitbuffer.h \
- bits/rlevector.h bits/../misc/utils.h bits/../misc/definitions.h
+vectors.o: bits/vectors.cpp bits/vectors.h bits/../misc/utils.h \
+ bits/../misc/definitions.h
 parameters.o: misc/parameters.cpp misc/parameters.h misc/definitions.h
 utils.o: misc/utils.cpp misc/utils.h misc/definitions.h
 qsufsort.o: qsufsort/qsufsort.c qsufsort/qsufsort.h \
  qsufsort/../misc/definitions.h
+convert_patterns.o: utils/convert_patterns.cpp \
+ utils/../misc/definitions.h utils/../misc/utils.h \
+ utils/../misc/definitions.h
+extract_text.o: utils/extract_text.cpp utils/../misc/definitions.h
+split_text.o: utils/split_text.cpp utils/../misc/definitions.h \
+ utils/../misc/utils.h utils/../misc/definitions.h