X-Git-Url: http://git.nguyen.vg/gitweb/?a=blobdiff_plain;f=tree.ml;h=4958a8281a1ea355298efd932a8a1eb2a932785a;hb=1b4d4c7a0537d30e21068f06535c5d3a1af92f88;hp=ecd8e3b9ac317fe628e5e46f63eed1e64c9ac559;hpb=eebef30070a951d852ce5811b289d8131a5300eb;p=SXSI%2Fxpathcomp.git diff --git a/tree.ml b/tree.ml index ecd8e3b..4958a82 100644 --- a/tree.ml +++ b/tree.ml @@ -4,571 +4,834 @@ (* Copyright NICTA 2008 *) (* Distributed under the terms of the LGPL (see LICENCE) *) (******************************************************************************) -module type BINARY = -sig - type node_content - type string_content - type descr = Nil | Node of node_content |String of string_content - type t - val parse_xml_uri : string -> t - val parse_xml_string : string -> t - val tag_pool : t -> Tag.pool - val string : t -> string - val descr : t -> descr - val left : t -> t - val right : t -> t - val parent : t -> t - val id : t -> int - val tag : t -> Tag.t - val print_xml_fast : out_channel -> t -> unit - val compare : t -> t -> int - val equal : t -> t -> bool - module DocIdSet : Set.S with type elt = string_content - val string_below : t -> string_content -> bool - val contains : t -> string -> DocIdSet.t - val contains_old : t -> string -> bool - val dump : t -> unit -end +INCLUDE "utils.ml" + + +external init_lib : unit -> unit = "caml_init_lib" + +exception CPlusPlusError of string + +let () = Callback.register_exception "CPlusPlusError" (CPlusPlusError "") + +let () = init_lib () + + +type tree +type 'a node = private int +type node_kind = [`Text | `Tree ] + +type t = { + doc : tree; + children : Ptset.Int.t array; + siblings : Ptset.Int.t array; + descendants: Ptset.Int.t array; + followings: Ptset.Int.t array; +} + +external inode : 'a node -> int = "%identity" +external nodei : int -> 'a node = "%identity" +let compare_node x y = (inode x) - (inode y) +let equal_node : 'a node -> 'a node -> bool = (==) -module XML = -struct - type t - type 'a node = int - type node_kind = [`Text | `Tree ] +external parse_xml_uri : string -> int -> bool -> bool -> tree = "caml_call_shredder_uri" +external parse_xml_string : string -> int -> bool -> bool -> tree = "caml_call_shredder_string" +external tree_print_xml_fast3 : tree -> [`Tree ] node -> Unix.file_descr ->unit = "caml_xml_tree_print" +external tree_save : tree -> Unix.file_descr -> string -> unit = "caml_xml_tree_save" +external tree_load : Unix.file_descr -> string -> bool -> int -> tree = "caml_xml_tree_load" - let compare : 'a node -> 'a node -> int = (-) - let equal : 'a node -> 'a node -> bool = (==) +external nullt : unit -> 'a node = "caml_xml_tree_nullt" - (* abstract type, values are pointers to a XMLTree C++ object *) - - external int_of_node : 'a node -> int = "%identity" +let nil : [`Tree ] node = nodei ~-1 +let nulldoc : [`Text ] node = nodei ~-1 +let root : [`Tree ] node = nodei 0 - external parse_xml_uri : string -> int -> bool -> bool -> t = "caml_call_shredder_uri" - - - external parse_xml_string : string -> int -> bool -> bool -> t = "caml_call_shredder_string" +external text_get_text : tree -> [`Text] node -> string = "caml_text_collection_get_text" +external text_is_empty : tree -> [`Text ] node -> bool = "caml_text_collection_empty_text" +let text_is_empty t n = (equal_node nulldoc n) || text_is_empty t n - module Text = - struct +external text_is_prefix : tree -> string -> bool = "caml_text_collection_is_prefix" +external text_is_suffix : tree -> string -> bool = "caml_text_collection_is_suffix" +external text_is_equal : tree -> string -> bool = "caml_text_collection_is_equal" +external text_is_contains : tree -> string -> bool = "caml_text_collection_is_contains" +external text_is_lessthan : tree -> string -> bool = "caml_text_collection_is_lessthan" - (* Todo *) - external nullt : unit -> [`Text ] node = "caml_xml_tree_nullt" - let nil = nullt () - external get_text : t -> [`Text] node -> string = "caml_text_collection_get_text" - - let get_text t n = - if equal nil n then "" - else get_text t n - - external is_empty : t -> [`Text ] node -> bool = "caml_text_collection_empty_text" - let is_empty t n = - (equal nil n) || is_empty t n - - external is_contains : t -> string -> bool = "caml_text_collection_is_contains" - external count_contains : t -> string -> int = "caml_text_collection_count_contains" - external contains : t -> string -> [`Text ] node array = "caml_text_collection_contains" - end +external text_count : tree -> string -> int = "caml_text_collection_count" +external text_count_prefix : tree -> string -> int = "caml_text_collection_count_prefix" +external text_count_suffix : tree -> string -> int = "caml_text_collection_count_suffix" +external text_count_equal : tree -> string -> int = "caml_text_collection_count_equal" +external text_count_contains : tree -> string -> int = "caml_text_collection_count_contains" +external text_count_lessthan : tree -> string -> int = "caml_text_collection_count_lessthan" +external text_prefix : tree -> string -> [`Text ] node array = "caml_text_collection_prefix" +external text_suffix : tree -> string -> [`Text ] node array = "caml_text_collection_suffix" +external text_equals : tree -> string -> [`Text ] node array = "caml_text_collection_equals" +external text_contains : tree -> string -> [`Text ] node array = "caml_text_collection_contains" +external text_lessthan : tree -> string -> [`Text ] node array = "caml_text_collection_lessthan" - module Tree = - struct - - external serialize : t -> string -> unit = "caml_xml_tree_serialize" - external unserialize : string -> t = "caml_xml_tree_unserialize" - - external root : t -> [`Tree] node = "caml_xml_tree_root" - external nullt : unit -> [`Tree ] node = "caml_xml_tree_nullt" - - let nil = nullt () - let is_nil x = equal x nil - - external parent : t -> [`Tree] node -> [`Tree] node = "caml_xml_tree_parent" - external parent_doc : t -> [`Text ] node -> [`Tree ] node = "caml_xml_tree_parent_doc" - external first_child : t -> [`Tree] node -> [`Tree] node = "caml_xml_tree_first_child" - - - - external next_sibling : t -> [`Tree] node -> [`Tree] node = "caml_xml_tree_next_sibling" - - external is_leaf : t -> [`Tree] node -> bool = "caml_xml_tree_is_leaf" - -(* external tag : t -> [`Tree ] node -> T = "caml_xml_tree_tag"*) - external tag_id : t -> [`Tree ] node -> Tag.t = "caml_xml_tree_tag_id" - - let is_last t n = equal nil (next_sibling t n) - - external prev_text : t -> [`Tree] node -> [`Text ] node = "caml_xml_tree_prev_text" - - - external my_text : t -> [`Tree] node -> [`Text ] node = "caml_xml_tree_my_text" - external next_text : t -> [`Tree] node -> [`Text ] node = "caml_xml_tree_next_text" - - external text_xml_id : t -> [`Text ] node -> int = "caml_xml_tree_text_xml_id" - external node_xml_id : t -> [`Tree ] node -> int = "caml_xml_tree_node_xml_id" - external is_ancestor : t -> [`Tree ] node -> [`Tree ] node -> bool = "caml_xml_tree_is_ancestor" - - let print_skel t = - let rec aux id = - if (is_nil id) - then Printf.eprintf "#\n" - else - begin - Printf.eprintf "Node %i has tag '%s' DocOrder=%i, DocID of PrevText,MyText,NextText : (%i = %s,%i = %s,%i = %s)\n%!" - (int_of_node id) - (Tag.to_string (tag_id t id)) - (node_xml_id t id) - (int_of_node (prev_text t id)) - (Text.get_text t (prev_text t id)) - (int_of_node (my_text t id)) - (Text.get_text t (my_text t id)) - (int_of_node (next_text t id)) - (Text.get_text t (next_text t id)); - aux(first_child t id); - aux(next_sibling t id); - end - in - aux (root t) +external tree_root : tree -> [`Tree] node = "caml_xml_tree_root" "noalloc" +external tree_size : tree -> int = "caml_xml_tree_size" "noalloc" +external tree_num_tags : tree -> int = "caml_xml_tree_num_tags" "noalloc" +external tree_subtree_size : tree -> [`Tree] node -> int = "caml_xml_tree_subtree_size" "noalloc" +external tree_subtree_elements : tree -> [`Tree] node -> int = "caml_xml_tree_subtree_elements" "noalloc" +external tree_subtree_tags : tree -> [`Tree] node -> Tag.t -> int = "caml_xml_tree_subtree_elements" "noalloc" - let traversal t = - let rec aux id = - if not (is_nil id) - then - begin - (* ignore (tag t id); - ignore (Text.get_text t (prev_text t id)); - if (is_leaf t id) - then ignore (Text.get_text t (my_text t id)); - if (is_last t id) - then ignore (Text.get_text t (next_text t id)); *) - aux (first_child t id); - aux (next_sibling t id); - end - in - aux (root t) +let tree_is_nil x = equal_node x nil +external tree_is_leaf : tree -> [`Tree ] node -> bool = "caml_xml_tree_is_leaf" "noalloc" +external tree_is_ancestor : tree -> [`Tree ] node -> [`Tree ] node -> bool = "caml_xml_tree_is_ancestor" "noalloc" +external tree_is_child : tree -> [`Tree ] node -> [`Tree ] node -> bool = "caml_xml_tree_is_child" "noalloc" +external tree_is_first_child : tree -> [`Tree ] node -> bool = "caml_xml_tree_is_first_child" "noalloc" +external tree_num_children : tree -> [`Tree ] node -> int = "caml_xml_tree_num_children" "noalloc" +external tree_child_number : tree -> [`Tree ] node -> int = "caml_xml_tree_child_number" "noalloc" +external tree_depth : tree -> [`Tree ] node -> int = "caml_xml_tree_depth" "noalloc" +external tree_preorder : tree -> [`Tree ] node -> int = "caml_xml_tree_preorder" "noalloc" +external tree_postorder : tree -> [`Tree ] node -> int = "caml_xml_tree_postorder" "noalloc" +external tree_tag : tree -> [`Tree ] node -> Tag.t = "caml_xml_tree_tag" "noalloc" +external tree_doc_ids : tree -> [`Tree ] node -> [`Text] node*[`Text] node = "caml_xml_tree_doc_ids" + +external tree_parent : tree -> [`Tree] node -> [`Tree] node = "caml_xml_tree_parent" "noalloc" +external tree_child : tree -> [`Tree] node -> int -> [`Tree] node = "caml_xml_tree_child" "noalloc" +external tree_first_child : tree -> [`Tree] node -> [`Tree] node = "caml_xml_tree_first_child" "noalloc" +external tree_first_element : tree -> [`Tree] node -> [`Tree] node = "caml_xml_tree_first_element" "noalloc" +external tree_last_child : tree -> [`Tree] node -> [`Tree] node = "caml_xml_tree_last_child" "noalloc" +external tree_next_sibling : tree -> [`Tree] node -> [`Tree] node = "caml_xml_tree_next_sibling" "noalloc" +external tree_next_element : tree -> [`Tree] node -> [`Tree] node = "caml_xml_tree_next_element" "noalloc" +external tree_prev_sibling : tree -> [`Tree] node -> [`Tree] node = "caml_xml_tree_prev_sibling" "noalloc" +external tree_tagged_child : tree -> [`Tree] node -> Tag.t -> [`Tree] node = "caml_xml_tree_tagged_child" "noalloc" + +type unordered_set +external unordered_set_alloc : int -> unordered_set = "caml_unordered_set_alloc" +external unordered_set_length : unordered_set -> int = "caml_unordered_set_length" +external unordered_set_insert : unordered_set -> int -> unit = "caml_unordered_set_set" "noalloc" + +external tree_select_child : tree -> [`Tree ] node -> unordered_set -> [`Tree] node = "caml_xml_tree_select_child" "noalloc" +external tree_tagged_following_sibling : tree -> [`Tree] node -> Tag.t -> [`Tree] node = "caml_xml_tree_tagged_following_sibling" "noalloc" +external tree_select_following_sibling : tree -> [`Tree ] node -> unordered_set -> [`Tree] node = "caml_xml_tree_select_following_sibling" "noalloc" +external tree_tagged_descendant : tree -> [`Tree ] node -> Tag.t -> [`Tree ] node = "caml_xml_tree_tagged_descendant" "noalloc" +external tree_select_descendant : tree -> [`Tree ] node -> unordered_set -> [`Tree] node = "caml_xml_tree_select_descendant" "noalloc" +external tree_tagged_following : tree -> [`Tree ] node -> Tag.t -> [`Tree ] node = "caml_xml_tree_tagged_following" "noalloc" +external tree_tagged_following_below : tree -> [`Tree ] node -> Tag.t -> [`Tree ] node -> [`Tree ] node = "caml_xml_tree_tagged_following_below" "noalloc" +external tree_select_following_below : tree -> [`Tree ] node -> unordered_set -> [`Tree] node -> [`Tree] node = "caml_xml_tree_select_following_below" "noalloc" + + +external tree_tagged_following_before : tree -> [`Tree ] node -> Tag.t -> [`Tree ] node -> [`Tree ] node = "caml_xml_tree_tagged_following_before" "noalloc" +external tree_select_following_below : tree -> [`Tree ] node -> unordered_set -> [`Tree] node -> [`Tree] node = "caml_xml_tree_select_following_before" "noalloc" + +external tree_my_text : tree -> [`Tree ] node -> [`Text] node = "caml_xml_tree_my_text" "noalloc" +external tree_my_text_unsafe : tree -> [`Tree ] node -> [`Text] node = "caml_xml_tree_my_text_unsafe" "noalloc" +external tree_text_xml_id : tree -> [`Text ] node -> int = "caml_xml_tree_text_xml_id" "noalloc" +external tree_node_xml_id : tree -> [`Tree ] node -> int = "caml_xml_tree_node_xml_id" "noalloc" + +external tree_parent_node : tree -> [`Text ] node -> [`Tree ] node = "caml_xml_tree_parent_node" "noalloc" + +(*external tree_prev_doc : tree -> [`Text ] node -> [`Tree ] node = "caml_xml_tree_prev_doc" "noalloc" *) + +external tree_closing : tree -> [`Tree] node -> [`Tree] node = "caml_xml_tree_closing" "noalloc" +external tree_is_open : tree -> [`Tree] node -> bool = "caml_xml_tree_is_open" "noalloc" + + +external benchmark_jump : tree -> Tag.t -> int = "caml_benchmark_jump" "noalloc" + +let benchmark_jump t s = benchmark_jump t.doc s + +external benchmark_fcns : tree -> int = "caml_benchmark_fcns" "noalloc" +external benchmark_fene : tree -> int = "caml_benchmark_fene" "noalloc" +external benchmark_iter : tree -> int = "caml_benchmark_iter" "noalloc" + +let benchmark_fcns t = benchmark_fcns t.doc + +let benchmark_fene t = benchmark_fene t.doc + +let benchmark_iter t = benchmark_iter t.doc + +external benchmark_lcps : tree -> unit = "caml_benchmark_lcps" "noalloc" + +let benchmark_lcps t = benchmark_lcps t.doc + + + + + + + +let text_size tree = inode (snd ( tree_doc_ids tree root )) + +let text_get_text t (x:[`Text] node) = + if x == nulldoc then "" + else text_get_text t x + + + + +module HPtset = Hashtbl.Make(Ptset.Int) + +let vector_htbl = HPtset.create MED_H_SIZE + +let ptset_to_vector s = + try + HPtset.find vector_htbl s + with + Not_found -> + let v = unordered_set_alloc (Ptset.Int.cardinal s) in + let _ = Ptset.Int.iter (fun e -> unordered_set_insert v e) s in + HPtset.add vector_htbl s v; v + + + +let subtree_size t i = tree_subtree_size t.doc i +let subtree_elements t i = tree_subtree_elements t.doc i +let text_size t = text_size t.doc + + +let rec fold_siblings tree f node acc = + if node == nil then acc else fold_siblings tree f (tree_next_sibling tree node) (f node acc) +module TS = + struct + type t = bool array + let create n = Array.create n false + let add e a = a.(e) <- true; a + let merge a b = + for i = 0 to Array.length a - 1 do + a.(i) <- a.(i) || b.(i) + done + let clear a = + for i = 0 to Array.length a - 1 do + a.(i) <- false; + done + + let to_ptset a = + let r = ref Ptset.Int.empty in + for i = 0 to Array.length a - 1 do + r := Ptset.Int.add i !r; + done; + !r end - - - module Binary = struct - - type node_content = - NC of [`Tree ] node - | SC of [`Text ] node * [`Tree ] node - type string_content = [ `Text ] node - type descr = - | Nil - | Node of node_content - | String of string_content - - type doc = t - - type t = { doc : doc; - node : descr } - - let dump { doc=t } = Tree.print_skel t - module DocIdSet = Set.Make (struct type t = string_content - let compare = (-) end) - - - open Tree - let node_of_t t = { doc= t; - node = Node(NC (root t)) } - - - let parse_xml_uri str = node_of_t - (parse_xml_uri str - !Options.sample_factor !Options.index_empty_texts !Options.disable_text_collection) - - let parse_xml_string str = node_of_t - (parse_xml_string str - !Options.sample_factor !Options.index_empty_texts !Options.disable_text_collection) - - - external pool : doc -> Tag.pool = "%identity" - let tag_pool t = pool t.doc - - let compare a b = match a.node,b.node with - | Node(NC i),Node(NC j) -> compare i j - | _, Node(NC( _ )) -> 1 - | Node(SC (i,_)),Node(SC (j,_)) -> compare i j - | Node(NC( _ )),Node(SC (_,_)) -> -1 - | _, Node(SC (_,_)) -> 1 - | String i, String j -> compare i j - | Node _ , String _ -> -1 - | _ , String _ -> 1 - | Nil, Nil -> 0 - | _,Nil -> -1 - - let equal a b = (compare a b) == 0 - - let string t = match t.node with - | String i -> Text.get_text t.doc i - | _ -> assert false - - let norm (n : [`Tree ] node ) = if is_nil n then Nil else Node (NC n) - - let descr t = t.node - - let nts = function - Nil -> "Nil" - | String i -> Printf.sprintf "String %i" i - | Node (NC t) -> Printf.sprintf "Node (NC %i)" (int_of_node t) - | Node (SC (t,i)) -> Printf.sprintf "Node (SC (%i,%i))" (int_of_node t) (int_of_node i) - - - let parent n = - let node' = - match n.node with - | Node(NC t) | Node(SC (_,t)) -> - if (Tree.root n.doc) == t - then Nil - else Node(NC(Tree.parent n.doc t)) (* A parent node can never be a SC *) - | _ -> assert false - in - { n with node = node' } - - let first_child n = - let node' = - match n.node with - | Node (NC t) when is_leaf n.doc t -> - let txt = my_text n.doc t in - if Text.is_empty n.doc txt - then Nil - else Node(SC (txt,Tree.nil)) - | Node (NC t) -> - let fs = first_child n.doc t in - let txt = prev_text n.doc fs in - if Text.is_empty n.doc txt - then norm fs - else Node (SC (txt, fs)) - | Node(SC (i,_)) -> String i - | Nil | String _ -> failwith "first_child" + + +let collect_children_siblings tree = + let ntags = (tree_num_tags tree) in + let () = Printf.eprintf ">>>length: %i\n%!" ntags in + let table_c = Array.init (tree_num_tags tree) (fun _ -> TS.create ntags) in + let table_n = Array.init (tree_num_tags tree) (fun _ -> TS.create ntags) in + let acc_tag n s = TS.add (tree_tag tree n) s in + let count = ref 0 in + let size = tree_subtree_size tree root in + let tmp = TS.create ntags in + let rec loop node = + if node == nil then () + else + let () = if !count mod 10000 == 0 then + Printf.eprintf "Node %i / %i\n%!" !count size; in - { n with node = node'} - - - let next_sibling n = - let node' = - match n.node with - | Node (SC (_,ns)) -> norm ns - | Node(NC t) -> - let ns = next_sibling n.doc t in - let txt = next_text n.doc t in - if Text.is_empty n.doc txt - then norm ns - else Node (SC (txt, ns)) - | Nil | String _ -> failwith "next_sibling" + let () = if !count mod 1000000 == 0 then Gc.compact() in + let () = count := !count + 1 in + let tag = tree_tag tree node in + let () = TS.clear tmp in + let children = + fold_siblings tree + acc_tag + (tree_first_child tree node) tmp in - { n with node = node'} - - - let left = first_child - let right = next_sibling - - let id = - function { doc=d; node=Node(NC n)} -> node_xml_id d n - | { doc=d; node=Node(SC (i,_) )} -> text_xml_id d i - | _ -> failwith "id" - - let tag = - function { node=Node(SC _) } -> Tag.pcdata - | { doc=d; node=Node(NC n)} -> tag_id d n - | _ -> failwith "tag" - -(* let tag_id = - function { node=Node(SC _) } -> () - | { doc=d; node=Node(NC n)} -> tag_id d n - | _ -> () -*) - let string_below t id = - let pid = parent_doc t.doc id in - match t.node with - | Node(NC(i)) -> (is_ancestor t.doc i pid) - | Node(SC(i,_)) -> (is_ancestor t.doc (parent_doc t.doc i) pid) - | _ -> false - - let contains t s = - Array.fold_left (fun a i -> DocIdSet.add i a) DocIdSet.empty (Text.contains t.doc s) - - let contains_old t s = - let regexp = Str.regexp_string s in - let matching arg = - try - let _ = Str.search_forward regexp arg 0; - in true - with _ -> false + let () = TS.merge table_c.(tag) children in + let () = TS.clear tmp in + let siblings = + fold_siblings tree + acc_tag + (tree_next_sibling tree node) tmp in - let rec find t = match t.node with - | Nil -> false - | String _ -> matching (string t) - | Node(_) -> (find (left t )) || (find (right t)) + TS.merge table_n.(tag) siblings; + loop (tree_first_child tree node); + loop (tree_next_sibling tree node) + in + loop root; + ( Array.map TS.to_ptset table_c, + Array.map TS.to_ptset table_n ) + +let collect_children_siblings tree = + let table_c = Array.create (tree_num_tags tree) Ptset.Int.empty in + let table_n = Array.copy table_c in + let rec loop node = + if node == nil then Ptset.Int.empty + else + let children = loop (tree_first_child tree node) in + let tag = tree_tag tree node in + let () = table_c.(tag) <- Ptset.Int.union table_c.(tag) children in + let siblings = loop (tree_next_sibling tree node) in + Ptset.Int.add tag siblings + in + ignore (loop root); + table_c, table_n + + + + +let collect_descendants tree = + let table_d = Array.create (tree_num_tags tree) Ptset.Int.empty in + let rec loop node = + if node == nil then Ptset.Int.empty + else + let d1 = loop (tree_first_child tree node) in + let d2 = loop (tree_next_sibling tree node) in + let tag = tree_tag tree node in + table_d.(tag) <- Ptset.Int.union table_d.(tag) d1; + Ptset.Int.add tag (Ptset.Int.union d1 d2) + in + ignore (loop root); + table_d + +let collect_followings tree = + let table_f = Array.create (tree_num_tags tree) Ptset.Int.empty in + let rec loop node acc = + if node == nil then acc else + let f1 = loop (tree_next_sibling tree node) acc in + let f2 = loop (tree_first_child tree node) f1 in + let tag = tree_tag tree node in + table_f.(tag) <- Ptset.Int.union table_f.(tag) f1; + Ptset.Int.add tag (Ptset.Int.union f1 f2) + in + ignore (loop root Ptset.Int.empty); + table_f + +let collect_tags tree = + let c,n = time (collect_children_siblings) tree ~msg:"Collecting child and sibling tags" in + let d = time collect_descendants tree ~msg:"Collecting descendant tags" in + let f = time collect_followings tree ~msg:"Collecting following tags" in + c,n,d,f + +let contains_array = ref [| |] +let contains_index = Hashtbl.create 4096 +let in_array _ i = + try + Hashtbl.find contains_index i + with + Not_found -> false + +let init_textfun f t s = + let a = match f with + | `CONTAINS -> text_contains t.doc s + | `STARTSWITH -> text_prefix t.doc s + | `ENDSWITH -> text_suffix t.doc s + | `EQUALS -> text_equals t.doc s + in + (*Array.fast_sort (compare) a; *) + contains_array := a; + Array.iter (fun x -> Hashtbl.add contains_index x true) !contains_array + +let count_contains t s = text_count_contains t.doc s + +let init_naive_contains t s = + let i,j = tree_doc_ids t.doc (tree_root t.doc) + in + let regexp = Str.regexp_string s in + let matching arg = + try + let _ = Str.search_forward regexp arg 0; + in true + with _ -> false + in + let rec loop n acc l = + if n >= j then acc,l + else + let s = text_get_text t.doc n in - find t - - let print_xml_fast outc t = - let rec loop ?(print_right=true) t = match t.node with - | Nil -> () - | String (s) -> output_string outc (string t) - | Node _ when Tag.equal (tag t) Tag.pcdata -> loop (left t); loop (right t) - - | Node (_) -> - let tg = Tag.to_string (tag t) in - let l = left t - and r = right t + if matching s + then loop (nodei ((inode n)+1)) (n::acc) (l+1) + else loop (nodei ((inode n)+1)) acc l + in + let acc,l = loop i [] 0 in + let a = Array.create l nulldoc in + let _ = List.fold_left (fun cpt e -> a.(cpt) <- e; (cpt-1)) (l-1) acc + in + contains_array := a + +let last_idx = ref 0 + +let array_find a i j = + let l = Array.length a in + let rec loop idx x y = + if x > y || idx >= l then nulldoc + else + if a.(idx) >= x then if a.(idx) > y then nulldoc else (last_idx := idx;a.(idx)) + else loop (idx+1) x y + in + if a.(0) > j || a.(l-1) < i then nulldoc + else loop !last_idx i j + +let text_below tree t = + let l = Array.length !contains_array in + let i,j = tree_doc_ids tree.doc t in + let id = if l == 0 then i else (array_find !contains_array i j) in + tree_parent_node tree.doc id + +let text_next tree t root = + let l = Array.length !contains_array in + let inf = nodei((inode(snd(tree_doc_ids tree.doc t)))+1) in + let _,j = tree_doc_ids tree.doc root in + let id = if l == 0 then if inf > j then nulldoc else inf + else array_find !contains_array inf j + in + tree_parent_node tree.doc id + + + +module DocIdSet = struct + include Set.Make (struct type t = [`Text] node + let compare = compare_node end) + +end +let is_nil t = t == nil + +let is_node t = t != nil +let is_root t = t == root + +let node_of_t t = + let _ = Tag.init (Obj.magic t) in + let c,n,d,f = collect_tags t + in + { doc= t; + children = c; + siblings = n; + descendants = d; + followings = f + + } + +let finalize _ = Printf.eprintf "Release the string list !\n%!" +;; + +let parse f str = + node_of_t + (f str + !Options.sample_factor + !Options.index_empty_texts + !Options.disable_text_collection) + +let parse_xml_uri str = parse parse_xml_uri str +let parse_xml_string str = parse parse_xml_string str + +let size t = tree_size t.doc;; + +external pool : tree -> Tag.pool = "%identity" + +let magic_string = "SXSI_INDEX" +let version_string = "3" + +let pos fd = + Unix.lseek fd 0 Unix.SEEK_CUR + +let pr_pos fd = Printf.eprintf "At position %i\n%!" (pos fd) + +let write fd s = + let sl = String.length s in + let ssl = Printf.sprintf "%020i" sl in + ignore (Unix.write fd ssl 0 20); + ignore (Unix.write fd s 0 (String.length s)) + +let rec really_read fd buffer start length = + if length <= 0 then () else + match Unix.read fd buffer start length with + 0 -> raise End_of_file + | r -> really_read fd buffer (start + r) (length - r);; + +let read fd = + let buffer = String.create 20 in + let _ = really_read fd buffer 0 20 in + let size = int_of_string buffer in + let buffer = String.create size in + let _ = really_read fd buffer 0 size in + buffer + +let save_tag_table channel t = + let t = Array.map (fun s -> Array.of_list (Ptset.Int.elements s)) t in + Marshal.to_channel channel t [] + +let save t str = + let fd = Unix.openfile str [ Unix.O_WRONLY;Unix.O_TRUNC;Unix.O_CREAT] 0o644 in + let out_c = Unix.out_channel_of_descr fd in + let _ = set_binary_mode_out out_c true in + output_string out_c magic_string; + output_char out_c '\n'; + output_string out_c version_string; + output_char out_c '\n'; + save_tag_table out_c t.children; + save_tag_table out_c t.siblings; + save_tag_table out_c t.descendants; + save_tag_table out_c t.followings; + (* we need to move the fd to the correct position *) + flush out_c; + ignore (Unix.lseek fd (pos_out out_c) Unix.SEEK_SET); + tree_save t.doc fd str; + close_out out_c +;; +let load_tag_table channel = + let table : int array array = Marshal.from_channel channel in + Array.map (fun a -> Ptset.Int.from_list (Array.to_list a)) table + +let load ?(sample=64) ?(load_text=true) str = + let fd = Unix.openfile str [ Unix.O_RDONLY ] 0o644 in + let in_c = Unix.in_channel_of_descr fd in + let _ = set_binary_mode_in in_c true in + let load_table () = + (let ms = input_line in_c in if ms <> magic_string then failwith "Invalid index file"); + (let vs = input_line in_c in if vs <> version_string then failwith "Invalid version file"); + let c = load_tag_table in_c in + let s = load_tag_table in_c in + let d = load_tag_table in_c in + let f = load_tag_table in_c in + c,s,d,f + in + let _ = Printf.eprintf "\nLoading tag table : " in + let c,s,d,f = time (load_table) () in + ignore(Unix.lseek fd (pos_in in_c) Unix.SEEK_SET); + let tree = { doc = tree_load fd str load_text sample; + children = c; + siblings = s; + descendants = d; + followings = f + } + in close_in in_c; + tree + + + + +let tag_pool t = pool t.doc + +let compare = compare_node + +let equal a b = a == b + +let nts = function + -1 -> "Nil" + | i -> Printf.sprintf "Node (%i)" i + +let dump_node t = nts (inode t) + +let is_left t n = tree_is_first_child t.doc n + + + +let is_below_right t n1 n2 = + tree_is_ancestor t.doc (tree_parent t.doc n1) n2 + && not (tree_is_ancestor t.doc n1 n2) + +let is_binary_ancestor t n1 n2 = + let p = tree_parent t.doc n1 in + let fin = tree_closing t.doc p in + n2 > n1 && n2 < fin +(* (is_below_right t n1 n2) || + (tree_is_ancestor t.doc n1 n2) *) + +let parent t n = tree_parent t.doc n + +let first_child t = let doc = t.doc in ();fun n -> tree_first_child doc n +let first_element t = let doc = t.doc in (); fun n -> tree_first_element doc n +let first_element t n = tree_first_element t.doc n +(* these function will be called in two times: first partial application + on the tag, then application of the tag and the tree, then application of + the other arguments. We use the trick to let the compiler optimize application +*) + +let tagged_child t tag = () ; fun n -> tree_tagged_child t.doc n tag + +let select_child t = fun ts -> + let v = ptset_to_vector ts in (); + fun n -> tree_select_child t.doc n v + +let next_sibling t = let doc = t.doc in (); fun n -> tree_next_sibling doc n +let next_element t = let doc = t.doc in (); fun n -> tree_next_element doc n +let next_element t n = tree_next_element t.doc n + +let tagged_following_sibling t tag = (); fun n -> tree_tagged_following_sibling t.doc n tag + +let select_following_sibling t = fun ts -> + let v = (ptset_to_vector ts) in (); + fun n -> tree_select_following_sibling t.doc n v + +let next_sibling_below t = (); fun n _ -> tree_next_sibling t.doc n +let next_element_below t = (); fun n _ -> tree_next_element t.doc n + +let tagged_following_sibling_below t tag = (); fun n _ -> tree_tagged_following_sibling t.doc n tag + +let select_following_sibling_below t = fun ts -> + let v = (ptset_to_vector ts) in (); + fun n _ -> tree_select_following_sibling t.doc n v + +let id t n = tree_node_xml_id t.doc n + +let tag t n = if n == nil then Tag.nullt else tree_tag t.doc n + +let tagged_descendant t tag = + let doc = t.doc in (); fun n -> tree_tagged_descendant doc n tag + +let select_descendant t = fun ts -> + let v = (ptset_to_vector ts) in (); + fun n -> tree_select_descendant t.doc n v + +let tagged_following_below t tag = + let doc = t.doc in + (); fun n ctx -> tree_tagged_following_below doc n tag ctx + +let select_following_below t = fun ts -> + let v = (ptset_to_vector ts) in (); + fun n ctx -> tree_select_following_below t.doc n v ctx + +let closing t n = tree_closing t.doc n +let is_open t n = tree_is_open t.doc n +let get_text_id t n = tree_my_text t.doc n + +let last_idx = ref 0 +let array_find a i j = + let l = Array.length a in + let rec loop idx x y = + if x > y || idx >= l then nil + else + if a.(idx) >= x then if a.(idx) > y then nil else (last_idx := idx;a.(idx)) + else loop (idx+1) x y + in + if a.(0) > j || a.(l-1) < i then nil + else loop !last_idx i j + + + + let count t s = text_count t.doc s + let stack = ref [] + let init_stack () = stack := [] + let push x = stack:= x::!stack + let peek () = match !stack with + p::_ -> p + | _ -> failwith "peek" + let pop () = match !stack with + p::r -> stack:=r; p + | _ -> failwith "pop" + + let next t = nodei ( (inode t) + 1 ) + let next2 t = nodei ( (inode t) + 2 ) + let next3 t = nodei ( (inode t) + 3 ) + + let print_xml_fast2 = + let _ = init_stack () in + let h = Hashtbl.create MED_H_SIZE in + let tag_str t = try Hashtbl.find h t with + Not_found -> let s = Tag.to_string t in + Hashtbl.add h t s;s + in + let h_att = Hashtbl.create MED_H_SIZE in + let att_str t = try Hashtbl.find h_att t with + Not_found -> let s = Tag.to_string t in + let attname = String.sub s 3 ((String.length s) -3) in + Hashtbl.add h_att t attname;attname + in fun outc tree t -> + let tree = tree.doc in + let fin = tree_closing tree t in + let rec loop_tag t tag = + if t <= fin then + if tree_is_open tree t then + (* opening tag *) + if tag == Tag.pcdata then + begin + output_string outc (text_get_text tree (tree_my_text_unsafe tree t)); + loop (next2 t) (* skip closing $ *) + end + else + let tagstr = tag_str tag in + let _ = output_char outc '<'; + output_string outc tagstr in + let t' = next t in + if tree_is_open tree t' then + let _ = push tagstr in + let tag' = tree_tag tree t' in + if tag' == Tag.attribute then let t'' = loop_attr (next t') 0 in + output_string outc ">"; loop t'' else (output_string outc ">";loop_tag t' tag') + else (* closing with no content *) + let _ = output_string outc "/>" in + loop (next t') + else + begin + (* closing tag *) + output_string outc "'; + loop (next t); + end + and loop t = loop_tag t (tree_tag tree t) + and loop_attr t n = + if tree_is_open tree t then + let attname = att_str (tree_tag tree t) in + output_char outc ' '; + output_string outc attname; + output_string outc "=\""; + let t = next t in (* open $@ *) + output_string outc (text_get_text tree (tree_my_text_unsafe tree t)); + output_char outc '"'; + loop_attr (next3 t) (n+1) + else + next t (* close @ *) + in loop t + + let print_xml_fast = + let h = Hashtbl.create MED_H_SIZE in + let tag_str t = try Hashtbl.find h t with + Not_found -> let s = Tag.to_string t in + Hashtbl.add h t s;s + in + let h_att = Hashtbl.create MED_H_SIZE in + let att_str t = try Hashtbl.find h_att t with + Not_found -> let s = Tag.to_string t in + let attname = String.sub s 3 ((String.length s) -3) in + Hashtbl.add h_att t attname;attname + in fun outc tree t -> + let rec loop ?(print_right=true) t = + if t != nil + then + let tagid = tree_tag tree.doc t in + if tagid==Tag.pcdata + then + begin + let tid = tree_my_text_unsafe tree.doc t in + output_string outc (text_get_text tree.doc tid); + if print_right + then loop (next_sibling tree t); + end + else + let tagstr = tag_str tagid in + let l = first_child tree t + and r = next_sibling tree t in output_char outc '<'; - output_string outc tg; - ( match l.node with - Nil -> output_string outc "/>" - | String _ -> assert false - | Node(_) when Tag.equal (tag l) Tag.attribute -> - (loop_attributes (left l); - match (right l).node with - | Nil -> output_string outc "/>" - | _ -> - output_char outc '>'; - loop (right l); - output_string outc "' ) - | _ -> - output_char outc '>'; - loop l; - output_string outc "' - );if print_right then loop r - and loop_attributes a = - - match a.node with - | Node(_) -> - let value = - match (left a).node with - | Nil -> "" - | _ -> string (left(left a)) - in - output_char outc ' '; - output_string outc (Tag.to_string (tag a)); - output_string outc "=\""; - output_string outc value; - output_char outc '"'; - loop_attributes (right a) - | _ -> () - in + output_string outc tagstr; + if l == nil then output_string outc "/>" + else + if (tag tree l) == Tag.attribute then + begin + loop_attributes (first_child tree l); + if (next_sibling tree l) == nil then output_string outc "/>" + else + begin + output_char outc '>'; + loop (next_sibling tree l); + output_string outc "'; + end; + end + else + begin + output_char outc '>'; + loop l; + output_string outc "'; + end; + if print_right then loop r + and loop_attributes a = + if a != nil + then + let attname = att_str (tag tree a) in + let fsa = first_child tree a in + let tid = tree_my_text_unsafe tree.doc fsa in + output_char outc ' '; + output_string outc attname; + output_string outc "=\""; + output_string outc (text_get_text tree.doc tid); + output_char outc '"'; + loop_attributes (next_sibling tree a) + in loop ~print_right:false t - let print_xml_fast outc t = - if Tag.to_string (tag t) = "" then - print_xml_fast outc (first_child t) - else print_xml_fast outc t - - let traversal t = Tree.traversal t.doc - let full_traversal t = - let rec aux n = - match n.node with - | Nil -> () - | String i -> () (*ignore(Text.get_text t.doc i) *) - | Node(_) -> - (* tag_id n; *) - aux (first_child n); - aux (next_sibling n) - in aux t - - let print_stats _ = () - end + let print_xml_fast outc tree t = + if (tag tree t) = Tag.document_node then + print_xml_fast outc tree (first_child tree t) + else print_xml_fast outc tree t -end +let tags_children t tag = t.children.(tag) +let tags_below t tag = t.descendants.(tag) +let tags_siblings t tag = t.siblings.(tag) +let tags_after t tag = t.followings.(tag) -module DEBUGTREE - = struct - - let _timings = Hashtbl.create 107 - - let time _ref f arg = - let t1 = Unix.gettimeofday () in - let r = f arg in - let t2 = Unix.gettimeofday () in - let t = (1000. *.(t2 -. t1)) in +let tags t tag = + t.children.(tag), + t.descendants.(tag), + t.siblings.(tag), + t.followings.(tag) - let (time,count) = try - Hashtbl.find _timings _ref - with - | Not_found -> 0.,0 - in - let time = time+. t - and count = count + 1 - in - Hashtbl.replace _timings _ref (time,count);r - - include XML.Binary - - - let first_child_ doc node = - time ("XMLTree.FirstChild()") (XML.Tree.first_child doc) node - let next_sibling_ doc node = - time ("XMLTree.NextSibling()") (XML.Tree.next_sibling doc) node - - let is_empty_ text node = - time ("TextCollection.IsEmpty()") (XML.Text.is_empty text) node - - let prev_text_ doc node = - time ("XMLTree.PrevText()") (XML.Tree.prev_text doc) node - - let my_text_ doc node = - time ("XMLTree.MyText()") (XML.Tree.my_text doc) node - - let next_text_ doc node = - time ("XMLTree.NextText()") (XML.Tree.next_text doc) node - - let is_leaf_ doc node = - time ("XMLTree.IsLeaf()") (XML.Tree.is_leaf doc ) node - - let node_xml_id_ doc node = - time ("XMLTree.NodeXMLId()") (XML.Tree.node_xml_id doc ) node - - let text_xml_id_ doc node = - time ("XMLTree.TextXMLId()") (XML.Tree.text_xml_id doc ) node - - - let first_child n = - let node' = - match n.node with - | Node (NC t) when is_leaf_ n.doc t -> - let txt = my_text_ n.doc t in - if is_empty_ n.doc txt - then Nil - else Node(SC (txt,XML.Tree.nil)) - | Node (NC t) -> - let fs = first_child_ n.doc t in - let txt = prev_text_ n.doc fs in - if is_empty_ n.doc txt - then norm fs - else Node (SC (txt, fs)) - | Node(SC (i,_)) -> String i - | Nil | String _ -> failwith "first_child" - in - { n with node = node'} - - - let next_sibling n = - let node' = - match n.node with - | Node (SC (_,ns)) -> norm ns - | Node(NC t) -> - let ns = next_sibling_ n.doc t in - let txt = - if XML.Tree.is_nil ns then - next_text_ n.doc t - else prev_text_ n.doc ns - in - if is_empty_ n.doc txt - then norm ns - else Node (SC (txt, ns)) - | Nil | String _ -> failwith "next_sibling" - in - { n with node = node'} - - let id = - function { doc=d; node=Node(NC n)} -> node_xml_id_ d n - | { doc=d; node=Node(SC (i,_) )} -> text_xml_id_ d i - | _ -> failwith "id" - - (* Wrapper around critical function *) - let string t = time ("TextCollection.GetText()") (string) t - let left = first_child - let right = next_sibling - let tag t = time ("XMLTree.GetTag()") (tag) t - - let print_stats ppf = - let total_time,total_calls = - Hashtbl.fold (fun _ (t,c) (tacc,cacc) -> - tacc+. t, cacc + c) _timings (0.,0) - in - Format.fprintf ppf - "Timing : Function Name, number of calls,%% of total calls, mean time, total time, %% of total time\n%!"; - Hashtbl.iter (fun name (time,count) -> - Format.fprintf ppf "%-27s% 8d\t% 4.2f%%\t% 4.6f ms\t% 4.6f ms\t%04.2f%%\n%!" - name - count - (100. *. (float_of_int count)/.(float_of_int total_calls)) - (time /. (float_of_int count)) - time - (100. *. time /. total_time)) _timings; - Format.fprintf ppf "-------------------------------------------------------------------\n"; - Format.fprintf ppf "%-27s% 8d\t% 4.0f%%\t########## ms\t% 4.6f ms\t% 4.0f%%\n%!" - "Total" total_calls 100. total_time 100. - - - let print_xml_fast outc t = - let rec loop ?(print_right=true) t = match t.node with - | Nil -> () - | String (s) -> output_string outc (string t) - | Node _ when Tag.equal (tag t) Tag.pcdata -> loop (left t); loop (right t) - - | Node (_) -> - let tg = Tag.to_string (tag t) in - let l = left t - and r = right t - in - output_char outc '<'; - output_string outc tg; - ( match l.node with - Nil -> output_string outc "/>" - | String _ -> assert false - | Node(_) when Tag.equal (tag l) Tag.attribute -> - (loop_attributes (left l); - match (right l).node with - | Nil -> output_string outc "/>" - | _ -> - output_char outc '>'; - loop (right l); - output_string outc "' ) - | _ -> - output_char outc '>'; - loop l; - output_string outc "' - );if print_right then loop r - and loop_attributes a = - - match a.node with - | Node(_) -> - let value = - match (left a).node with - | Nil -> "" - | _ -> string (left(left a)) - in - output_char outc ' '; - output_string outc (Tag.to_string (tag a)); - output_string outc "=\""; - output_string outc value; - output_char outc '"'; - loop_attributes (right a) - | _ -> () - in - loop ~print_right:false t +let rec binary_parent t n = + let r = + if tree_is_first_child t.doc n + then tree_parent t.doc n + else tree_prev_sibling t.doc n + in if tree_tag t.doc r = Tag.pcdata then + binary_parent t r + else r + +let doc_ids t n = tree_doc_ids t.doc n + +let subtree_tags t tag = (); + fun n -> if n == nil then 0 else + tree_subtree_tags t.doc n tag + +let get_text t n = + let tid = tree_my_text t.doc n in + if tid == nulldoc then "" else + text_get_text t.doc tid + + +let dump_tree fmt tree = + let rec loop t n = + if t != nil then + let tag = (tree_tag tree.doc t ) in + let tagstr = Tag.to_string tag in + let tab = String.make n ' ' in + + if tag == Tag.pcdata || tag == Tag.attribute_data + then + Format.fprintf fmt "%s<%s>%s\n" + tab tagstr (text_get_text tree.doc (tree_my_text tree.doc t)) tagstr + else begin + Format.fprintf fmt "%s<%s>\n" tab tagstr; + loop (tree_first_child tree.doc t) (n+2); + Format.fprintf fmt "%s\n%!" tab tagstr; + end; + loop (tree_next_sibling tree.doc t) n + in + loop root 0 +;; + + +let print_xml_fast3 t = tree_print_xml_fast3 t.doc + + + + +let stats t = + let tree = t.doc in + let rec loop left node acc_d total_d num_leaves = + if node == nil then + (acc_d+total_d,if left then num_leaves+1 else num_leaves) + else + let d,td = loop true (tree_first_child tree node) (acc_d+1) total_d num_leaves in + loop false (tree_next_sibling tree node) (acc_d) d td + in + let a,b = loop true root 0 0 0 + in + Printf.eprintf "Average depth: %f, number of leaves %i\n%!" ((float_of_int a)/. (float_of_int b)) b +;; - let print_xml_fast outc t = - if Tag.to_string (tag t) = "" then - print_xml_fast outc (first_child t) - else print_xml_fast outc t - -end -module Binary = DEBUGTREE +let test_prefix t s = Array.length (text_prefix t.doc s) +let test_suffix t s = Array.length (text_suffix t.doc s) +let test_contains t s = Array.length (text_contains t.doc s) +let test_equals t s = Array.length (text_equals t.doc s)