X-Git-Url: http://git.nguyen.vg/gitweb/?a=blobdiff_plain;f=tree.ml;h=730e174172e7f3c5231be6c4eaa2b06a1da22dad;hb=f0557f21878be17ddc75b1bc8f4f86da68c8e604;hp=9cb5ef6f67b4bdb91c57ab65087af93a5d903b15;hpb=70ff0bfc463882ecf233f1b1a7ac4a8007fa4cc2;p=SXSI%2Fxpathcomp.git diff --git a/tree.ml b/tree.ml index 9cb5ef6..730e174 100644 --- a/tree.ml +++ b/tree.ml @@ -6,36 +6,43 @@ (******************************************************************************) INCLUDE "utils.ml" + +external init_lib : unit -> unit = "caml_init_lib" + +exception CPlusPlusError of string + +let () = Callback.register_exception "CPlusPlusError" (CPlusPlusError "") + +let () = init_lib () + + type tree -type 'a node = int +type 'a node = private int type node_kind = [`Text | `Tree ] - -let compare_node : 'a node -> 'a node -> int = (-) + +external inode : 'a node -> int = "%identity" +external nodei : int -> 'a node = "%identity" +let compare_node x y = (inode x) - (inode y) let equal_node : 'a node -> 'a node -> bool = (==) - -(* abstract type, values are pointers to a XMLTree C++ object *) -external int_of_node : 'a node -> int = "%identity" external parse_xml_uri : string -> int -> bool -> bool -> tree = "caml_call_shredder_uri" external parse_xml_string : string -> int -> bool -> bool -> tree = "caml_call_shredder_string" -external save_tree : tree -> string -> unit = "caml_xml_tree_save" -external load_tree : string -> int -> tree = "caml_xml_tree_load" +external tree_save : tree -> Unix.file_descr -> unit = "caml_xml_tree_save" +external tree_load : Unix.file_descr -> tree = "caml_xml_tree_load" external nullt : unit -> 'a node = "caml_xml_tree_nullt" -let nil : 'a node = -1 -let root : [`Tree ] node = 0 +let nil : [`Tree ] node = nodei ~-1 +let nulldoc : [`Text ] node = nodei ~-1 +let root : [`Tree ] node = nodei 0 external text_get_tc_text : tree -> [`Text] node -> string = "caml_text_collection_get_text" external text_is_empty : tree -> [`Text ] node -> bool = "caml_text_collection_empty_text" -let text_is_empty t n = - (equal_node nil n) || text_is_empty t n - - +let text_is_empty t n = (equal_node nulldoc n) || text_is_empty t n external text_is_contains : tree -> string -> bool = "caml_text_collection_is_contains" external text_count_contains : tree -> string -> int = "caml_text_collection_count_contains" @@ -43,67 +50,64 @@ external text_count : tree -> string -> int = "caml_text_collection_count" external text_contains : tree -> string -> [`Text ] node array = "caml_text_collection_contains" external text_unsorted_contains : tree -> string -> unit = "caml_text_collection_unsorted_contains" external text_get_cached_text : tree -> [`Text] node -> string = "caml_text_collection_get_cached_text" + +external tree_root : tree -> [`Tree] node = "caml_xml_tree_root" +external tree_subtree_size : tree -> [`Tree] node -> int = "caml_xml_tree_subtree_size" + +let tree_is_nil x = equal_node x nil +external tree_parent : tree -> [`Tree] node -> [`Tree] node = "caml_xml_tree_parent" "noalloc" +external tree_parent_doc : tree -> [`Text ] node -> [`Tree ] node = "caml_xml_tree_parent_doc" "noalloc" +(*external tree_prev_doc : tree -> [`Text ] node -> [`Tree ] node = "caml_xml_tree_prev_doc" "noalloc" *) +external tree_first_child : tree -> [`Tree] node -> [`Tree] node = "caml_xml_tree_first_child" "noalloc" +external tree_first_element : tree -> [`Tree] node -> [`Tree] node = "caml_xml_tree_first_element" "noalloc" +external tree_tagged_child : tree -> [`Tree] node -> Tag.t -> [`Tree] node = "caml_xml_tree_tagged_child" "noalloc" +external tree_next_sibling : tree -> [`Tree] node -> [`Tree] node = "caml_xml_tree_next_sibling" "noalloc" +external tree_next_element : tree -> [`Tree] node -> [`Tree] node = "caml_xml_tree_next_element" "noalloc" +external tree_tagged_sibling : tree -> [`Tree] node -> Tag.t -> [`Tree] node = "caml_xml_tree_tagged_sibling" "noalloc" -external tree_serialize : tree -> string -> unit = "caml_xml_tree_serialize" - -external tree_unserialize : string -> tree = "caml_xml_tree_unserialize" - -external tree_root : tree -> [`Tree] node = "caml_xml_tree_root" +external tree_prev_sibling : tree -> [`Tree] node -> [`Tree] node = "caml_xml_tree_prev_sibling" "noalloc" +external tree_is_leaf : tree -> [`Tree] node -> bool = "caml_xml_tree_is_leaf" "noalloc" +external tree_last_child : tree -> [`Tree] node -> [`Tree] node = "caml_xml_tree_last_child" "noalloc" +external tree_is_first_child : tree -> [`Tree] node -> bool = "caml_xml_tree_is_first_child" "noalloc" -let tree_is_nil x = equal_node x nil -external tree_parent : tree -> [`Tree] node -> [`Tree] node = "caml_xml_tree_parent" -external tree_parent_doc : tree -> [`Text ] node -> [`Tree ] node = "caml_xml_tree_parent_doc" -external tree_prev_doc : tree -> [`Text ] node -> [`Tree ] node = "caml_xml_tree_prev_doc" -external tree_first_child : tree -> [`Tree] node -> [`Tree] node = "caml_xml_tree_first_child" -external tree_tagged_child : tree -> [`Tree] node -> Tag.t -> [`Tree] node = "caml_xml_tree_tagged_child" -external tree_next_sibling : tree -> [`Tree] node -> [`Tree] node = "caml_xml_tree_next_sibling" -external tree_tagged_sibling : tree -> [`Tree] node -> Tag.t -> [`Tree] node = "caml_xml_tree_tagged_sibling" - -external tree_prev_sibling : tree -> [`Tree] node -> [`Tree] node = "caml_xml_tree_prev_sibling" -external tree_is_leaf : tree -> [`Tree] node -> bool = "caml_xml_tree_is_leaf" -external tree_last_child : tree -> [`Tree] node -> [`Tree] node = "caml_xml_tree_last_child" -external tree_is_first_child : tree -> [`Tree] node -> bool = "caml_xml_tree_is_first_child" - -(* external tag : tree -> [`Tree ] node -> T = "caml_xml_tree_tag"*) -external tree_tag_id : tree -> [`Tree ] node -> Tag.t = "caml_xml_tree_tag_id" +external tree_tag_id : tree -> [`Tree ] node -> Tag.t = "caml_xml_tree_tag_id" "noalloc" let tree_is_last t n = equal_node nil (tree_next_sibling t n) -external tree_prev_text : tree -> [`Tree] node -> [`Text ] node = "caml_xml_tree_prev_text" +(*external tree_prev_text : tree -> [`Tree] node -> [`Text ] node = "caml_xml_tree_prev_text" "noalloc" *) -external tree_my_text : tree -> [`Tree] node -> [`Text ] node = "caml_xml_tree_my_text" -external tree_next_text : tree -> [`Tree] node -> [`Text ] node = "caml_xml_tree_next_text" +external tree_my_text : tree -> [`Tree] node -> [`Text ] node = "caml_xml_tree_my_text" "noalloc" +(*external tree_next_text : tree -> [`Tree] node -> [`Text ] node = "caml_xml_tree_next_text" "noalloc" *) external tree_doc_ids : tree -> [`Tree ] node -> [`Text ] node * [`Text ] node = "caml_xml_tree_doc_ids" -let text_size tree = int_of_node (snd ( tree_doc_ids tree (Obj.magic 0) )) +let text_size tree = inode (snd ( tree_doc_ids tree root )) -let text_get_cached_text t x = - if x == -1 then "" +let text_get_cached_text t (x:[`Text] node) = + if x == nulldoc then "" else text_get_cached_text t x -external tree_text_xml_id : tree -> [`Text ] node -> int = "caml_xml_tree_text_xml_id" -external tree_node_xml_id : tree -> [`Tree ] node -> int = "caml_xml_tree_node_xml_id" -external tree_is_ancestor : tree -> [`Tree ] node -> [`Tree ] node -> bool = "caml_xml_tree_is_ancestor" -external tree_tagged_desc : tree -> [`Tree ] node -> Tag.t -> [`Tree ] node = "caml_xml_tree_tagged_desc" -external tree_tagged_foll_below : tree -> [`Tree ] node -> Tag.t -> [`Tree ] node -> [`Tree ] node = "caml_xml_tree_tagged_foll_below" -external tree_subtree_tags : tree -> [`Tree ] node -> Tag.t -> int = "caml_xml_tree_subtree_tags" +external tree_text_xml_id : tree -> [`Text ] node -> int = "caml_xml_tree_text_xml_id" "noalloc" +external tree_node_xml_id : tree -> [`Tree ] node -> int = "caml_xml_tree_node_xml_id" "noalloc" +external tree_is_ancestor : tree -> [`Tree ] node -> [`Tree ] node -> bool = "caml_xml_tree_is_ancestor" "noalloc" +external tree_tagged_desc : tree -> [`Tree ] node -> Tag.t -> [`Tree ] node = "caml_xml_tree_tagged_desc" "noalloc" +external tree_tagged_foll_below : tree -> [`Tree ] node -> Tag.t -> [`Tree ] node -> [`Tree ] node = "caml_xml_tree_tagged_foll_below" "noalloc" +external tree_subtree_tags : tree -> [`Tree ] node -> Tag.t -> int = "caml_xml_tree_subtree_tags" "noalloc" +type unordered_set +external unordered_set_alloc : int -> unordered_set = "caml_unordered_set_alloc" +external unordered_set_length : unordered_set -> int = "caml_unordered_set_length" +external unordered_set_insert : unordered_set -> int -> unit = "caml_unordered_set_set" "noalloc" -type int_vector -external int_vector_alloc : int -> int_vector = "caml_int_vector_alloc" -external int_vector_length : int_vector -> int = "caml_int_vector_length" -external int_vector_set : int_vector -> int -> int -> unit = "caml_int_vector_set" - -external tree_select_child : tree -> [`Tree ] node -> int_vector -> [`Tree] node = "caml_xml_tree_select_child" -external tree_select_foll_sibling : tree -> [`Tree ] node -> int_vector -> [`Tree] node = "caml_xml_tree_select_foll_sibling" -external tree_select_desc : tree -> [`Tree ] node -> int_vector -> [`Tree] node = "caml_xml_tree_select_desc" -external tree_select_foll_below : tree -> [`Tree ] node -> int_vector -> [`Tree] node -> [`Tree] node = "caml_xml_tree_select_foll_below" +external tree_select_child : tree -> [`Tree ] node -> unordered_set -> [`Tree] node = "caml_xml_tree_select_child" "noalloc" +external tree_select_foll_sibling : tree -> [`Tree ] node -> unordered_set -> [`Tree] node = "caml_xml_tree_select_foll_sibling" "noalloc" +external tree_select_desc : tree -> [`Tree ] node -> unordered_set -> [`Tree] node = "caml_xml_tree_select_desc" "noalloc" +external tree_select_foll_below : tree -> [`Tree ] node -> unordered_set -> [`Tree] node -> [`Tree] node = "caml_xml_tree_select_foll_below" "noalloc" module HPtset = Hashtbl.Make(Ptset.Int) @@ -115,16 +119,16 @@ let ptset_to_vector s = HPtset.find vector_htbl s with Not_found -> - let v = int_vector_alloc (Ptset.Int.cardinal s) in - let _ = Ptset.Int.fold (fun e i -> int_vector_set v i e;i+1) s 0 in + let v = unordered_set_alloc (Ptset.Int.cardinal s) in + let _ = Ptset.Int.iter (fun e -> unordered_set_insert v e) s in HPtset.add vector_htbl s v; v type t = { doc : tree; - ttable : (Tag.t,(Ptset.Int.t*Ptset.Int.t)) Hashtbl.t; + ttable : (Tag.t,(Ptset.Int.t*Ptset.Int.t*Ptset.Int.t*Ptset.Int.t)) Hashtbl.t; } - +let subtree_size t i = tree_subtree_size t.doc i let text_size t = text_size t.doc module MemUnion = Hashtbl.Make (struct @@ -138,6 +142,13 @@ module MemUnion = Hashtbl.Make (struct if x < y then HASHINT2(x,y) else HASHINT2(y,x) end) +module MemAdd = Hashtbl.Make ( + struct + type t = Tag.t*Ptset.Int.t + let equal (x,y) (z,t) = (x == z)&&(Ptset.Int.equal y t) + let hash (x,y) = HASHINT2(x,Ptset.Int.hash y) + end) + let collect_tags tree = let h_union = MemUnion.create BIG_H_SIZE in let pt_cup s1 s2 = @@ -148,41 +159,48 @@ let collect_tags tree = in MemUnion.add h_union (s1,s2) s;s in - let h_add = Hashtbl.create BIG_H_SIZE in - let pt_add t s = - let k = HASHINT2(Tag.hash t,Ptset.Int.hash s) in - try - Hashtbl.find h_add k - with + let h_add = MemAdd.create BIG_H_SIZE in + let pt_add t s = + try MemAdd.find h_add (t,s) + with | Not_found -> let r = Ptset.Int.add t s in - Hashtbl.add h_add k r;r + MemAdd.add h_add (t,s) r;r in let h = Hashtbl.create BIG_H_SIZE in - let update t sb sa = - let sbelow,safter = + let update t sc sb ss sa = + let schild,sbelow,ssibling,safter = try Hashtbl.find h t with | Not_found -> - (Ptset.Int.empty,Ptset.Int.empty) + (Ptset.Int.empty,Ptset.Int.empty,Ptset.Int.empty,Ptset.Int.empty) in - Hashtbl.replace h t (pt_cup sbelow sb, pt_cup safter sa) + Hashtbl.replace h t + (pt_cup sc schild,pt_cup sbelow sb, pt_cup ssibling ss, pt_cup safter sa) in - let rec loop id acc = - if equal_node id nil - then (Ptset.Int.empty,acc) + let rec loop_right id acc_sibling acc_after= + if id == nil + then (acc_sibling,acc_after) + else + let sibling2,after2 = loop_right (tree_next_sibling tree id) acc_sibling acc_after in + let child1,below1 = loop_left (tree_first_child tree id) after2 in + let tag = tree_tag_id tree id in + update tag child1 below1 sibling2 after2; + (pt_add tag sibling2, (pt_add tag (pt_cup after2 below1))) + and loop_left id acc_after = + if id == nil + then (Ptset.Int.empty,Ptset.Int.empty) else - let below2,after2 = loop (tree_next_sibling tree id) acc in - let below1,after1 = loop (tree_first_child tree id) after2 in + let sibling2,after2 = loop_right (tree_next_sibling tree id) Ptset.Int.empty acc_after in + let child1,below1 = loop_left (tree_first_child tree id) after2 in let tag = tree_tag_id tree id in - update tag below1 after2; - pt_add tag (pt_cup below1 below2), (pt_add tag after1) + update tag child1 below1 sibling2 after2; + (pt_add tag sibling2,(pt_add tag (pt_cup after2 below1))) in - let _ = loop (tree_root tree) Ptset.Int.empty in h - - - - + let _ = loop_left (tree_root tree) Ptset.Int.empty in h + + + let contains_array = ref [| |] let contains_index = Hashtbl.create 4096 @@ -218,15 +236,43 @@ let init_naive_contains t s = let s = text_get_cached_text t.doc n in if matching s - then loop (n+1) (n::acc) (l+1) - else loop (n+1) acc l + then loop (nodei ((inode n)+1)) (n::acc) (l+1) + else loop (nodei ((inode n)+1)) acc l in let acc,l = loop i [] 0 in - let a = Array.create l nil in + let a = Array.create l nulldoc in let _ = List.fold_left (fun cpt e -> a.(cpt) <- e; (cpt-1)) (l-1) acc in contains_array := a + +let last_idx = ref 0 + +let array_find a i j = + let l = Array.length a in + let rec loop idx x y = + if x > y || idx >= l then nulldoc + else + if a.(idx) >= x then if a.(idx) > y then nulldoc else (last_idx := idx;a.(idx)) + else loop (idx+1) x y + in + if a.(0) > j || a.(l-1) < i then nulldoc + else loop !last_idx i j +let text_below tree t = + let l = Array.length !contains_array in + let i,j = tree_doc_ids tree.doc t in + let id = if l == 0 then i else (array_find !contains_array i j) in + tree_parent_doc tree.doc id + +let text_next tree t root = + let l = Array.length !contains_array in + let inf = nodei((inode(snd(tree_doc_ids tree.doc t)))+1) in + let _,j = tree_doc_ids tree.doc root in + let id = if l == 0 then if inf > j then nulldoc else inf + else array_find !contains_array inf j + in + tree_parent_doc tree.doc id + module DocIdSet = struct @@ -263,18 +309,84 @@ let parse_xml_string str = parse parse_xml_string str external pool : tree -> Tag.pool = "%identity" -let save t str = (save_tree t.doc str) +let magic_string = "SXSI_INDEX" +let version_string = "1" + +let pos fd = + Unix.lseek fd 0 Unix.SEEK_CUR + +let pr_pos fd = Printf.eprintf "At position %i\n%!" (pos fd) + +let write fd s = + let sl = String.length s in + let ssl = Printf.sprintf "%020i" sl in + ignore (Unix.write fd ssl 0 20); + ignore (Unix.write fd s 0 (String.length s)) + +let rec really_read fd buffer start length = + if length <= 0 then () else + match Unix.read fd buffer start length with + 0 -> raise End_of_file + | r -> really_read fd buffer (start + r) (length - r);; + +let read fd = + let buffer = String.create 20 in + let _ = really_read fd buffer 0 20 in + let size = int_of_string buffer in + let buffer = String.create size in + let _ = really_read fd buffer 0 size in + buffer + + +let save t str = + let fd = Unix.openfile str [ Unix.O_WRONLY;Unix.O_TRUNC;Unix.O_CREAT] 0o644 in + let out_c = Unix.out_channel_of_descr fd in + let _ = set_binary_mode_out out_c true in + output_string out_c magic_string; + output_char out_c '\n'; + output_string out_c version_string; + output_char out_c '\n'; + Marshal.to_channel out_c t.ttable [ ]; + (* we need to move the fd to the correct position *) + flush out_c; + ignore (Unix.lseek fd (pos_out out_c) Unix.SEEK_SET); + tree_save t.doc fd; + close_out out_c ;; let load ?(sample=64) str = - node_of_t (load_tree str sample) - + let fd = Unix.openfile str [ Unix.O_RDONLY ] 0o644 in + let in_c = Unix.in_channel_of_descr fd in + let _ = set_binary_mode_in in_c true in + (let ms = input_line in_c in if ms <> magic_string then failwith "Invalid index file"); + (let vs = input_line in_c in if vs <> version_string then failwith "Invalid version file"); + let table : (Tag.t,(Ptset.Int.t*Ptset.Int.t*Ptset.Int.t*Ptset.Int.t)) Hashtbl.t = + Marshal.from_channel in_c + in + let ntable = Hashtbl.create (Hashtbl.length table) in + Hashtbl.iter (fun k (s1,s2,s3,s4) -> + let ss1 = Ptset.Int.fold (Ptset.Int.add) s1 Ptset.Int.empty + and ss2 = Ptset.Int.fold (Ptset.Int.add) s2 Ptset.Int.empty + and ss3 = Ptset.Int.fold (Ptset.Int.add) s3 Ptset.Int.empty + and ss4 = Ptset.Int.fold (Ptset.Int.add) s4 Ptset.Int.empty + in Hashtbl.add ntable k (ss1,ss2,ss3,ss4) + ) table; + Hashtbl.clear table; + (* The in_channel read a chunk of fd, so we might be after + the start of the XMLTree save file. Reset to the correct + position *) + ignore(Unix.lseek fd (pos_in in_c) Unix.SEEK_SET); + let tree = { doc = tree_load fd; + ttable = ntable;} + in close_in in_c; + tree + let tag_pool t = pool t.doc -let compare a b = a - b +let compare = compare_node let equal a b = a == b @@ -282,16 +394,18 @@ let nts = function -1 -> "Nil" | i -> Printf.sprintf "Node (%i)" i -let dump_node t = nts t +let dump_node t = nts (inode t) - let is_left t n = tree_is_first_child t.doc n -let is_below_right t n1 n2 = tree_is_ancestor t.doc (tree_parent t.doc n1) n2 - +let is_below_right t n1 n2 = + tree_is_ancestor t.doc (tree_parent t.doc n1) n2 + && not (tree_is_ancestor t.doc n1 n2) + let parent t n = tree_parent t.doc n let first_child t = (); fun n -> tree_first_child t.doc n +let first_element t = (); fun n -> tree_first_element t.doc n (* these function will be called in two times: first partial application on the tag, then application of the tag and the tree, then application of @@ -305,6 +419,8 @@ let select_child t = fun ts -> fun n -> tree_select_child t.doc n v let next_sibling t = (); fun n -> tree_next_sibling t.doc n +let next_element t = (); fun n -> tree_next_element t.doc n + let tagged_sibling t tag = (); fun n -> tree_tagged_sibling t.doc n tag let select_sibling t = fun ts -> @@ -312,6 +428,7 @@ let select_sibling t = fun ts -> fun n -> tree_select_foll_sibling t.doc n v let next_sibling_ctx t = (); fun n _ -> tree_next_sibling t.doc n +let next_element_ctx t = (); fun n _ -> tree_next_element t.doc n let tagged_sibling_ctx t tag = (); fun n _ -> tree_tagged_sibling t.doc n tag let select_sibling_ctx t = fun ts -> @@ -328,7 +445,7 @@ let select_desc t = fun ts -> let v = (ptset_to_vector ts) in (); fun n -> tree_select_desc t.doc n v -let tagged_foll_ctx t tag = (); fun n ctx -> tree_tagged_foll_below t.doc n tag ctx +let tagged_foll_ctx t tag = (); fun n ctx -> tree_tagged_foll_below t.doc n tag ctx let select_foll_ctx t = fun ts -> let v = (ptset_to_vector ts) in (); @@ -356,10 +473,15 @@ let array_find a i j = then let tagid = tree_tag_id tree.doc t in if tagid==Tag.pcdata - then output_string outc (text_get_cached_text tree.doc t); - if print_right - then loop (next_sibling tree t) - + then + begin + let tid = tree_my_text tree.doc t in + let _ = Printf.eprintf "my_text %i returned %i\n%!" (inode t) (inode tid) + in + output_string outc (text_get_cached_text tree.doc tid); + if print_right + then loop (next_sibling tree t); + end else let tagstr = Tag.to_string tagid in let l = first_child tree t @@ -391,14 +513,19 @@ let array_find a i j = output_char outc '>'; end; if print_right then loop r - and loop_attributes a = + and loop_attributes a = + if a != nil + then let s = (Tag.to_string (tag tree a)) in let attname = String.sub s 3 ((String.length s) -3) in + let fsa = first_child tree a in + let tid = tree_my_text tree.doc fsa in + let _ = Printf.eprintf "my_text %i returned %i\n%!" (inode fsa) (inode tid) + in output_char outc ' '; output_string outc attname; output_string outc "=\""; - output_string outc (text_get_cached_text tree.doc - (tree_my_text tree.doc (first_child tree a))); + output_string outc (text_get_cached_text tree.doc tid); output_char outc '"'; loop_attributes (next_sibling tree a) in @@ -410,19 +537,27 @@ let array_find a i j = print_xml_fast outc tree (first_child tree t) else print_xml_fast outc tree t +let tags_children t tag = + let a,_,_,_ = Hashtbl.find t.ttable tag in a let tags_below t tag = - fst(Hashtbl.find t.ttable tag) - + let _,a,_,_ = Hashtbl.find t.ttable tag in a +let tags_siblings t tag = + let _,_,a,_ = Hashtbl.find t.ttable tag in a let tags_after t tag = - snd(Hashtbl.find t.ttable tag) + let _,_,_,a = Hashtbl.find t.ttable tag in a + let tags t tag = Hashtbl.find t.ttable tag -let binary_parent t n = +let rec binary_parent t n = + let r = if tree_is_first_child t.doc n then tree_parent t.doc n else tree_prev_sibling t.doc n + in if tree_tag_id t.doc r = Tag.pcdata then + binary_parent t r + else r let doc_ids t n = tree_doc_ids t.doc n @@ -432,7 +567,7 @@ let subtree_tags t tag = (); let get_text t n = let tid = tree_my_text t.doc n in - if tid == nil then "" else + if tid == nulldoc then "" else text_get_cached_text t.doc tid