Added approximate pattern matching with Suffix Filters

[SXSI/TextCollection.git] / dependencies.mk

diff --git a/dependencies.mk b/dependencies.mk
index e8f8dbc..494b444 100644 (file)
--- a/dependencies.mk
+++ b/dependencies.mk
@@ -1,37 +1,40 @@
 BitRank.o: BitRank.cpp BitRank.h BlockArray.h Tools.h
+EditDistance.o: EditDistance.cpp EditDistance.h Tools.h
 FMIndex.o: FMIndex.cpp FMIndex.h incbwt/bits/deltavector.h \
  incbwt/bits/bitvector.h incbwt/bits/../misc/definitions.h \
  incbwt/bits/bitbuffer.h BitRank.h BlockArray.h Tools.h TextCollection.h \
  TextStorage.h ArrayDoc.h
 FMIndexBuilder.o: FMIndexBuilder.cpp incbwt/rlcsa_builder.h \
- incbwt/rlcsa.h incbwt/bits/vectors.h incbwt/bits/deltavector.h \
- incbwt/bits/bitvector.h incbwt/bits/../misc/definitions.h \
- incbwt/bits/bitbuffer.h incbwt/bits/rlevector.h incbwt/sasamples.h \
- incbwt/misc/definitions.h incbwt/bits/bitbuffer.h \
- incbwt/bits/deltavector.h incbwt/lcpsamples.h incbwt/bits/array.h \
- incbwt/misc/utils.h incbwt/misc/definitions.h incbwt/misc/parameters.h \
- incbwt/bits/deltavector.h FMIndexBuilder.h TextCollectionBuilder.h \
- TextCollection.h Tools.h TextStorage.h FMIndex.h BitRank.h BlockArray.h \
- ArrayDoc.h
+ incbwt/rlcsa.h incbwt/bits/deltavector.h incbwt/bits/bitvector.h \
+ incbwt/bits/../misc/definitions.h incbwt/bits/bitbuffer.h \
+ incbwt/bits/rlevector.h incbwt/bits/nibblevector.h incbwt/sasamples.h \
+ incbwt/misc/definitions.h incbwt/bits/bitbuffer.h incbwt/lcpsamples.h \
+ incbwt/bits/array.h incbwt/misc/utils.h incbwt/misc/definitions.h \
+ incbwt/misc/parameters.h incbwt/bits/deltavector.h FMIndexBuilder.h \
+ TextCollectionBuilder.h TextCollection.h Tools.h TextStorage.h FMIndex.h \
+ BitRank.h BlockArray.h ArrayDoc.h
 HeapProfiler.o: HeapProfiler.cpp HeapProfiler.h
+Query.o: Query.cpp Query.h TextCollection.h Tools.h
 RLCSABuilder.o: RLCSABuilder.cpp incbwt/rlcsa_builder.h incbwt/rlcsa.h \
- incbwt/bits/vectors.h incbwt/bits/deltavector.h incbwt/bits/bitvector.h \
+ incbwt/bits/deltavector.h incbwt/bits/bitvector.h \
  incbwt/bits/../misc/definitions.h incbwt/bits/bitbuffer.h \
- incbwt/bits/rlevector.h incbwt/sasamples.h incbwt/misc/definitions.h \
- incbwt/bits/bitbuffer.h incbwt/bits/deltavector.h incbwt/lcpsamples.h \
+ incbwt/bits/rlevector.h incbwt/bits/nibblevector.h incbwt/sasamples.h \
+ incbwt/misc/definitions.h incbwt/bits/bitbuffer.h incbwt/lcpsamples.h \
  incbwt/bits/array.h incbwt/misc/utils.h incbwt/misc/definitions.h \
  incbwt/misc/parameters.h RLCSABuilder.h TextCollectionBuilder.h \
  TextCollection.h Tools.h TextStorage.h incbwt/bits/deltavector.h \
- RLCSAWrapper.h incbwt/rlcsa.h
+ RLCSAWrapper.h IndelQuery.h ResultSet.h EditDistance.h Query.h \
+ incbwt/rlcsa.h
+ResultSet.o: ResultSet.cpp ResultSet.h
 TextCollection.o: TextCollection.cpp TextCollection.h Tools.h FMIndex.h \
  incbwt/bits/deltavector.h incbwt/bits/bitvector.h \
  incbwt/bits/../misc/definitions.h incbwt/bits/bitbuffer.h BitRank.h \
  BlockArray.h TextStorage.h ArrayDoc.h SWCSAWrapper.h \
  swcsa/utils/defValues.h swcsa/utils/valstring.h swcsa/interface.h \
- RLCSAWrapper.h incbwt/rlcsa.h incbwt/bits/vectors.h \
- incbwt/bits/deltavector.h incbwt/bits/rlevector.h incbwt/sasamples.h \
- incbwt/misc/definitions.h incbwt/bits/bitbuffer.h \
- incbwt/bits/deltavector.h incbwt/lcpsamples.h incbwt/bits/array.h \
+ RLCSAWrapper.h IndelQuery.h ResultSet.h EditDistance.h Query.h \
+ incbwt/rlcsa.h incbwt/bits/deltavector.h incbwt/bits/rlevector.h \
+ incbwt/bits/nibblevector.h incbwt/sasamples.h incbwt/misc/definitions.h \
+ incbwt/bits/bitbuffer.h incbwt/lcpsamples.h incbwt/bits/array.h \
  incbwt/misc/utils.h incbwt/misc/definitions.h incbwt/misc/parameters.h
 TextCollectionBuilder.o: TextCollectionBuilder.cpp \
  TextCollectionBuilder.h TextCollection.h Tools.h TextStorage.h \